Taubenberger J, Morens D. 1918 influenza: the mother of all pandemics. Emerg Infect Dis. 2006;12(1):15–22. doi:10.3201/eid1209.05-0979.
Article
PubMed
PubMed Central
Google Scholar
Leung G, Hedley A, Ho L, Chau P, Wong I, Thach T, Ghani A, Donnelly C, Fraser C, Riley S. The epidemiology of severe acute respiratory syndrome in the 2003 Hong Kong epidemic: an analysis of all 1755 patients. Ann Intern Med. 2004;141(9):662–73. doi:10.7326/0003-4819-141-9-200411020-00006.
Article
PubMed
Google Scholar
Fraser C, Donnelly C, Cauchemez S, Hanage W, Van Kerkhove M, Hollingsworth T, Griffin J, Baggaley R, Jenkins H, Lyons E. Pandemic potential of a strain of influenza A (H1N1): early findings. Science. 2009;324(5934):1557–61. doi:10.1126/science.1176062.
Article
CAS
PubMed
PubMed Central
Google Scholar
Anderson R, Fraser C, Ghani A, Donnelly C, Riley S, Ferguson N, Leung G, Lam T, Hedley A. Epidemiology, transmission dynamics and control of SARS: the 2002–2003 epidemic. Philos Trans R Soc B Biol Sci. 2004;359(1447):1091–105. doi:10.1098/rstb.2004.1490.
Article
Google Scholar
Meyers L, Pourbohloul B, Newman M, Skowronski D, Brunham R. Network theory and SARS: predicting outbreak diversity. J Theor Biol. 2005;232(1):71–81. doi:10.1016/j.jtbi.2004.07.026.
Article
PubMed
Google Scholar
Read J, Eames K, Edmunds W. Dynamic social networks and the implications for the spread of infectious disease. J R Soc Interface. 2008;5(26):1001–7. doi:10.1098/rsif.2008.0013.
Article
PubMed
PubMed Central
Google Scholar
Salathé M, Kazandjieva M, Lee JW, Levis P, Feldman MW, Jones JH. A high-resolution human contact network for infectious disease transmission. Proc Natl Acad Sci. 2010;107(51):22020–5. doi:10.1073/pnas.1009094108.
Article
PubMed
PubMed Central
Google Scholar
Meyers LA, Newman M, Martin M, Schrag S. Applying network theory to epidemics: control measures for Mycoplasma pneumoniae outbreaks. Emerg Infect Dis. 2003;9(2):204–10.
Article
PubMed Central
Google Scholar
Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N. Structure of social contact networks and their impact on epidemics. DIMACS Ser Discrete Math Theor Comput Sci. 2006;70:179–85.
Google Scholar
Guo D. Visual analytics of spatial interaction patterns for pandemic decision support. Int J Geogr Inf Sci. 2007;21(8):859–77. doi:10.1080/13658810701349037.
Article
Google Scholar
Luo W, MacEachren AM. Geo-social visual analytics. J Spat Inf Sci. 2014;8:27–66. doi:10.5311/JOSIS.2014.8.139.
Google Scholar
Lee VJ, Lye DC, Wilder-Smith A. Combination strategies for pandemic influenza response—a systematic review of mathematical modeling studies. BMC Med. 2009;7(1):76. doi:10.1186/1741-7015-7-76.
Article
PubMed
PubMed Central
Google Scholar
Broeck WV, Gioannini C, Gonçalves B, Quaggiotto M, Colizza V, Vespignani A. The GLEaMviz computational tool, a publicly available software to explore realistic epidemic spreading scenarios at the global scale. BMC Infect Dis. 2011;11(1):37. doi:10.1186/1471-2334-11-37.
Article
PubMed
PubMed Central
Google Scholar
Maciejewski R, Livengood P, Rudolph S, Collins TF, Ebert DS, Brigantic RT, Corley CD, Muller GA, Sanders SW. A pandemic influenza modeling and visualization tool. J Vis Lang Comput. 2011;22(4):268–78. doi:10.1016/j.jvlc.2011.04.002.
Article
Google Scholar
Meyers L. Contact network epidemiology: bond percolation applied to infectious disease prediction and control. Bull Am Math Soc. 2007;44(1):63–86. doi:10.1090/S0273-0979-06-01148-7.
Article
Google Scholar
Bian L, Liebner D. A network model for dispersion of communicable diseases. Trans GIS. 2007;11(2):155–73. doi:10.1111/j.1467-9671.2007.01039.x.
Article
Google Scholar
Bian L. A conceptual framework for an individual-based spatially explicit epidemiological model. Environ Plan B. 2004;31(3):381–96. doi:10.1068/b2833.
Article
Google Scholar
Keeling M, Eames K. Networks and epidemic models. J R Soc Interface. 2005;2(4):295–307. doi:10.1098/rsif.2005.0051.
Article
PubMed
PubMed Central
Google Scholar
Koopman J. Modeling infection transmission. Public Health. 2004;25:303–26. doi:10.1146/annurev.publhealth.25.102802.124353.
Article
Google Scholar
Longini IM, Halloran ME. Strategy for distribution of influenza vaccine to high-risk groups and children. Am J Epidemiol. 2005;161(4):303–6. doi:10.1093/aje/kwi053.
Article
PubMed
Google Scholar
Emanuel EJ, Wertheimer A. Who should get influenza vaccine when not all can? Science. 2010;312(5775):854–5. doi:10.1126/science.1125347.
Article
Google Scholar
Mao L, Bian L. A dynamic network with individual mobility for designing vaccination strategies. Trans GIS. 2010;14(4):533–45. doi:10.1111/j.1467-9671.2010.01201.x.
Article
Google Scholar
Masuda N. Immunization of networks with community structure. New J Phys. 2009;11:123018. doi:10.1088/1367-2630/11/12/123018.
Article
Google Scholar
Zanette DH, Kuperman M. Effects of immunization in small-world epidemics. Phys A. 2002;309(3–4):445–52. doi:10.1016/S0378-4371(02)00618-0.
Article
Google Scholar
Carrat F, Luong J, Lao H, Sallé AV, Lajaunie C, Wackernagel H. A ‘small-world-like’ model for comparing interventions aimed at preventing and controlling influenza pandemics. BMC Med. 2006;4(1):26.
Article
PubMed
PubMed Central
Google Scholar
Kiss IZ, Green DM, Kao RR. Disease contact tracing in random and clustered networks. Proc R Soc Lond B Biol Sci. 2005;272(1570):1407–14. doi:10.1098/rspb.2005.3092.
Article
Google Scholar
Rhodes C, Anderson RM. Epidemic thresholds and vaccination in a lattice model of disease spread. Theor Popul Biol. 1997;52(2):101–18. doi:10.1006/tpbi.1997.1323.
Article
CAS
PubMed
Google Scholar
Pastor-Satorras R, Vespignani A. Immunization of complex networks. Phys Rev E. 2002;65(3):036104. doi:10.1103/PhysRevE.65.036104.
Article
Google Scholar
Salathé M, Jones J. Dynamics and control of diseases in networks with community structure. PLoS Comput Biol. 2010;6(4):e1000736. doi:10.1371/journal.pcbi.1000736.
Article
PubMed
PubMed Central
Google Scholar
Zanette DH, Kuperman M. Effects of immunization in small-world epidemics. Phys A. 2002;309(3):445–52. doi:10.1016/S0378-4371(02)00618-0.
Article
Google Scholar
Burke DS, Epstein JM, Cummings DA, Parker JI, Cline KC, Singa RM, Chakravarty S. Individual-based computational modeling of smallpox epidemic control strategies. Acad Emerg Med. 2006;13(11):1142–9.
Article
PubMed
Google Scholar
Ferguson N, Cummings D, Fraser C, Cajka J, Cooley P, Burke D. Strategies for mitigating an influenza pandemic. Nature. 2006;442(7101):448–52. doi:10.1038/nature04795.
Article
CAS
PubMed
Google Scholar
Mao L, Bian L. Spatial-temporal transmission of influenza and its health risks in an urbanized area. Comput Environ Urban Syst. 2010;34(3):204–15. doi:10.1016/j.compenvurbsys.2010.03.004.
Article
Google Scholar
Thomas J, Cook K. Illuminating the path: the research and development agenda for visual analytics. Washington, DC: IEEE Computer Society; 2005.
Bisset KR, Chen J, Feng X, Kumar V, Marathe MV. EpiFast: a fast algorithm for large scale realistic epidemic simulations on distributed memory systems. In: Proceedings of the 23rd international conference on supercomputing, New York, NY, USA; 2009. ACM. p. 430–9. doi:10.1145/1542275.1542336.
Bisset K, Marathe M. A cyber environment to support pandemic planning and response. DOE SciDAC Rev Mag. 2009;13:36–47.
Google Scholar
Stehle J, Voirin N, Barrat A, Cattuto C, Isella L, Pinton JF, Quaggiotto M, Van Den Broeck W, Regis C, Lina B. High-resolution measurements of face-to-face contact patterns in a primary school. PLoS One. 2011;6(8):e23176. doi:10.1371/journal.pone.0023176.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cattuto C, Van den Broeck W, Barrat A, Colizza V, Pinton J-F, Vespignani A. Dynamics of person-to-person interactions from distributed RFID sensor networks. PLoS One. 2010;5(7):e11596. doi:10.1371/journal.pone.0011596.
Article
PubMed
PubMed Central
Google Scholar
Gemmetto V, Barrat A, Cattuto C. Mitigation of infectious disease at school: targeted class closure vs school closure. BMC Infect Dis. 2014;14(1):1. doi:10.1186/s12879-014-0695-9.
Article
Google Scholar
Halloran ME, Ferguson NM, Eubank S, Longini IM, Cummings DAT, Lewis B, Xu S, Fraser C, Vullikanti A, Germann TC. Modeling targeted layered containment of an influenza pandemic in the United States. Proc Natl Acad Sci. 2008;105(12):4639–44. doi:10.1073/pnas.0706849105.
Article
CAS
PubMed
PubMed Central
Google Scholar
Di Battista G, Eades P, Tamassia R, Tollis IG. Graph drawing: algorithms for the visualization of graphs. Upper Saddle River: Prentice-Hall; 1998.
Google Scholar
Herman I, Melançon G, Marshall M. Graph visualization and navigation in information visualization: a survey. IEEE Trans Vis Comput Graph. 2000;6(1):24–43. doi:10.1109/2945.841119.
Article
Google Scholar
Henry N, Fekete J, McGuffin M. NodeTrix: a hybrid visualization of social networks. IEEE Trans Vis Comput Graph. 2007;13(6):1302–9. doi:10.1109/TVCG.2007.70582.
Article
PubMed
Google Scholar
Bertin J, Barbut M. Sémiologie graphique: les diagrammes, les réseaux, les cartes. Paris: Editions de l’Ecole des Hautes Etudes en Sciences; 1967.
Google Scholar
Anderson R, May R. Infectious diseases of humans: dynamics and control. Oxford: Oxford University Press; 1992.
Google Scholar
Mills CE, Robins JM, Lipsitch M. Transmissibility of 1918 pandemic influenza. Nature. 2004;432(7019):904–6. doi:10.1038/nature03063.
Article
CAS
PubMed
Google Scholar
Ferguson N, Cummings D, Cauchemez S, Fraser C, Riley S, Meeyai A, Iamsirithaworn S, Burke D. Strategies for containing an emerging influenza pandemic in Southeast Asia. Nature. 2005;437(7056):209–14. doi:10.1038/nature04017.
Article
CAS
PubMed
Google Scholar
Diekmann O, Heesterbeek J, Metz JA. On the definition and the computation of the basic reproduction ratio R0 in models for infectious diseases in heterogeneous populations. J Math Biol. 1990;28(4):365–82. doi:10.1007/BF00178324.
Article
CAS
PubMed
Google Scholar
Heymann D. Control of communicable diseases manual. 18th ed. Washington, DC: American Public Health Association; 2004. doi:10.2105/CCDM.2745.
Google Scholar
Freeman LC. Centrality in social networks conceptual clarification. Soc Netw. 1978;1(3):215–39. doi:10.1016/0378-8733(78)90021-7.
Article
Google Scholar
Eubank S, Guclu H, Anil Kumar V, Marathe M, Srinivasan A, Toroczkai Z, Wang N. Modelling disease outbreaks in realistic urban social networks. Nature. 2004;429(6988):180–4. doi:10.1038/nature02541.
Article
CAS
PubMed
Google Scholar
Apolloni A, Kumar VSA, Marathe MV, Swarup S. Computational epidemiology in a connected world. Computer. 2009;42(12):83–6. doi:10.1109/MC.2009.386.
Article
Google Scholar
Gao P, Bian L. Scale effects on spatially embedded contact networks. Comput Environ Urban Syst. 2016;59:142–51. doi:10.1016/j.compenvurbsys.2016.06.002.
Article
PubMed
Google Scholar
Cliff A, Haggett P. Time, travel and infection. Br Med Bull. 2004;69(1):87–99. doi:10.1093/bmb/ldh011.
Article
PubMed
Google Scholar